Everyone that deals with geographic/spatial/geospatial data knows they need specialised tools for the job. Fortunately, there are a ton of open source tools up for the challenge. In my latest book, Geospatial Power Tools, I show how to use an advanced set of command line tools that you can start using today. From re-projecting point coordinates to slicing and dicing satellite images, check out a sample chapter here or go directly to the Locate Press site where you can buy a PDF. Amazon has the print version.
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